PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G1873
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 529aa    MW: 55392.3 Da    PI: 8.4927
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G1873genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-056183123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C++C+k F r  nL+ H r H
  Gh_D11G1873 61 FVCEICNKGFQRDQNLQLHRRGH 83
                 89*******************88 PP

2zf-C2H211.10.0012137159123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC +C+k +  +s+ k H + +
  Gh_D11G1873 137 WKCDKCSKKYAVQSDWKAHSKIC 159
                  58*****************9876 PP

3zf-C2H211.50.00092167185523
                  TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                  dCg++Fsr++++ +H   +
  Gh_D11G1873 167 DCGTVFSRRDSFITHRAFC 185
                  9**************8765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.89E-66083No hitNo description
Gene3DG3DSA:3.30.160.601.8E-56083IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0176183IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9496183IPR007087Zinc finger, C2H2
PfamPF121718.5E-56183IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.8E-4125158IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.89E-6132157No hitNo description
SMARTSM00355150137157IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MPVDLDNSST ASGEASVTSS GNQNPLPKST AKKKRNLPGM PDPDAEVIAL SPRTLLATNR  60
FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSSKEVKKR VYVCPEITCV HHHPSRALGD  120
LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS DWKAHSKICG TREYKCDCGT VFSRRDSFIT  180
HRAFCDVLAE ERAKAQTQPQ PQNQNQTATK ESDPKPQTTD SSPPSAAAPV SVSAPESGKV  240
PAPAPAVPQL TSVISSSALP IQSSDLPENP SPIMEESLAP APAAAPTGLN GSCSSSASLG  300
SNGSSGSGSR CSVFASLFAS STTSASLKPQ QPPVFIDLFQ SVGQPDCLTD LAPSPSIEPI  360
SLCLSTNHGS SIFGTAGQEH RQYAPPPQPA MSATALLQKA AQMGATATNA SLLHGLGIAS  420
LSSSSAQQDN LQWGQRQVEP ENTSVVAGLG LGLPRDGSSG LKELMMGTPV FGPKQATLDF  480
LGLGMAAGGS PNGGLSALIT SIGGELDVVA AATSFGGGDF TSKDIGRSS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.42280.0boll| ovule| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ9083091e-170DQ908309.1 Gossypium hirsutum clone LIB5327-031-A1-N1-D7_Gh370 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012491681.10.0PREDICTED: protein indeterminate-domain 2-like isoform X1
SwissprotQ9LVQ70.0IDD1_ARATH; Protein indeterminate-domain 1
TrEMBLA0A0D2SH580.0A0A0D2SH58_G
STRINGPOPTR_0007s12520.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-121indeterminate(ID)-domain 2